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fastq-dl Public
Download FASTQ files from SRA or ENA repositories.
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camlhmp Public
🐪Classification through yAML Heuristic Mapping Protocol 🐪
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binf-training Public
An accumulation of things related to bioinformatics training
Python MIT License UpdatedOct 13, 2025 -
plugins Public
Forked from nextflow-io/pluginsNextflow plugins index repository
UpdatedOct 3, 2025 -
MAST Public
Forked from guthrielab/MASTMycobacteria Amplicon Sequencing Tool
Python GNU General Public License v3.0 UpdatedAug 27, 2025 -
steamboat-py Public
A collection of tools/scripts for microbial bioinformatics
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official_joke_api Public
Forked from 15Dkatz/official_joke_apiOfficial Joke API!
JavaScript MIT License UpdatedMar 12, 2025 -
dragonflye Public
🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads
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awesome-bioinformatics-gotchas Public
Forked from samuell/awesome-bioinformatics-gotchasGotchas from the trenches of bioinformatics
Creative Commons Zero v1.0 Universal UpdatedDec 20, 2024 -
executor-feedstock Public
Forked from conda-forge/executor-feedstockA conda-smithy repository for executor.
BSD 3-Clause "New" or "Revised" License UpdatedNov 4, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedOct 23, 2024 -
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sizemeup Public
A simple tool to determine the genome size of an organism
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bactopia Public
Forked from bactopia/bactopiaA flexible pipeline for complete analysis of bacterial genomes
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modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedAug 27, 2024 -
pasty Public
A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates
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sccmec Public
A tool for typing SCCmec cassettes in assemblies
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Cecret Public
Forked from UPHL-BioNGS/CecretReference-based consensus creation
Nextflow MIT License UpdatedAug 13, 2024 -
pbptyper Public
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
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ClermonTyping Public
Forked from happykhan/ClermonTypingClermont PCR method In-Silico
Python GNU General Public License v3.0 UpdatedJul 17, 2024 -
hicap Public
Forked from scwatts/hicap👋🎓 in silico typing of the H. influenzae cap locus
Python GNU General Public License v3.0 UpdatedMay 16, 2024 -
configs Public
Forked from nf-core/configsConfig files used to define parameters specific to compute environments at different Institutions
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viralrecon Public
Forked from nf-core/viralreconAssembly and intrahost/low-frequency variant calling for viral samples
Nextflow MIT License UpdatedApr 28, 2024 -
django-steamboat Public
A custom sequence information management system powered by Django
Python MIT License UpdatedApr 16, 2024 -
ubinfie.github.io Public
Forked from ubinfie/ubinfie.github.ioµbinfie blog
HTML Creative Commons Zero v1.0 Universal UpdatedApr 4, 2024 -
primerForge Public
Forked from dr-joe-wirth/primerForgesoftware to identify primers that can distinguish genomes
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illumina-cleanup Public archive
A simple pipeline for pre-processing Illumina FASTQ files.
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server Public
Forked from LandSandBoat/server⛵ LandSandBoat - a server emulator for Final Fantasy XI. Just an X-34 landspeeder out for a drive.
Lua GNU General Public License v3.0 UpdatedMar 1, 2024
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