My application materials for fellowships and societies shared publicly to guide others

messing with baumdicker dispensable gene sfs

Course materials for Advanced Biological Statistics II, Bio 610B, at the University of Oregon.

Methods for examining PCA locally along the genome.

efficient, forwards-time simulation of populations on raster-based landscapes

A native R simulator for the discrete coalescent

discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

A probabilistic programming language in TensorFlow. Deep generative models, variational inference.

Visualization and annotation of CNVs from population-scale whole-genome sequencing data

NSF PGRP 2015 highland adaptation

De novo assembly based variant calling pipeline for Illumina short reads

Logfold script for reptiming

A tool for discovering transposable elements and describing patterns of genome evolution

A coalescent simulator for genome-scale sequences

🌸 A command-line fuzzy finder

Get hourly meteorological data from one of thousands of global stations

modified from scm-latexdiff

maize historical genomics

Using ANGSD and Python/R to calculate and plot pi-between in windows along the genome

tools for working with genome variation graphs

Haplotype based scans for selection

PAAP — preprocessing and alignment pipeline using Slurm array jobs

The Ross-Ibarra's lab documentation