Fast method for inferring cancer clonal population structure from SNV data.

my solutions to problems from Rosalind.

Oncogenicity Variant Interpreter for somatic variants

Smart Automatic Cover Art Downloader

📖 A collection of pure bash alternatives to external processes.

A community Bash framework.

A tool for processing Bio-Rad ddSEQ single cell RNA-seq data

cfDNA cell type of origin estimation

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

System wide proxy configuration in a single script with options to add, remove proxy and restore system default proxy configuration

An interactive tool for rapid analysis of diagnostic and antimicrobial pattern in R using Shiny

📜 🎉 Automated reporting of objects in R

Framework for allele specific analysis of matched tumor and normal next generation sequencing data

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

A new bootable USB solution.

Mutational signature analysis for low statistics SNV data

📈 📊 Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

Oh my tmux! My self-contained, pretty & versatile tmux configuration made with 💛🩷💙🖤❤️🤍

ABEMUS: platform specific and data informed detection of somatic SNVs in cfDNA

🎓 All things Vim!

Make Complex Heatmaps

Vim mapping for sorting a range of text

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Curated list of bioinformatics formats and publications

Plugin that highlights when you press tmux prefix key

Workflows for converting between sequence data formats