Protein Secondary Structure prediction using PSSM matrix, HMM profile, Structure length average, Word2Vec Embeddings

Predicting Secondary Protein Structures

Pras Server is a library to repair PDB or mmCIF structures, add missing heavy atoms and hydrogen atoms and assign secondary structure by amide-amide interactions of the backbone

GOR3 algorithm implementation using Python (Pandas)

This repository contains all of the code and data used to investigate the hypothesis that convolutional neural networks trained on protein sequences learn predominantly on secondary structure.

Secondary Protein Structure Prediction 🔬 using Neural Networks and Deep Learning 💻 .

This repository is for the replication of our published paper "Protein Secondary Structure Prediction Using Cascaded Convolutional and Recurrent Neural Networks" on IJCAI2016. Please consult and co…

OPUS-X: An Open-Source Toolkit for Protein Torsion Angles, Secondary Structure, Solvent Accessibility, Contact Map Predictions, and 3D Folding

Recurrent neural network implementations for protein secondary structure prediction and language models

Protein Secondary Structure Prediction Using Deep Learning With PointNet Architecture.

An implementation for Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction, https://arxiv.org/abs/1403.1347

Protein Secondary Structure Prediction with Neural Networks

Using CNN to Predict Secondary Structure in proteins

A New Enhancing PSSM Tool for Protein Secondary Structure Prediction

STRIDE: Protein secondary structure assignment from atomic coordinates

NetSurfP 3.0: Protein secondary structure and relative solvent accessibility prediction

Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

Protein 8-class secondary structure prediction

Deep learning architectures for protein secondary structure prediction (version 2)

Emap2sec is a computational tool to identify protein secondary structures

RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

The new source code of the LinearFold, linear-time prediction for RNA secondary structures

Application to assign secondary structure to proteins

Protein Secondary Structure predictor using Convolutional Neural Networks

A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

This is the working repository for the CSDP project. CSDP is a solver for semidefinite programming problems. It is a COIN-OR project.

Simultaneous Transformation and Rounding (STAR) Models for Count-Valued Data