RF-DETR is a real-time object detection and segmentation model architecture developed by Roboflow, SOTA on COCO and designed for fine-tuning.

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

Segment Anything Model API

🐍 Geometric Computer Vision Library for Spatial AI

Segment Anything in Medical Images

Implementation of MultiStain-CycleGAN

Learning image representations for anomaly detection: application to discovery of histological alterations in drug development

Reusable JavaFX tools for QuPath (and beyond)

ONNX Runtime: cross-platform, high performance ML inferencing and training accelerator

Gradle plugins to help create QuPath extensions

An app for managing github starred repositories.

EPCY: Evaluation of Predictive CapabilitY for ranking biomarker gene candidates

Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics

Modeling Latent Flow Structure using Hodge Decomposition

A short tutorial on how to use RSEM

Convert markdown to html in Zenn format

🔬 Code-free deep segmentation for computational pathology

Cell-type Relationship Analysis Workflow Done Across Distances

native Python dataclasses for the OME data model

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

A napari plugin for making animations

Imaris file format reader

Skeleton segmentation in CT images

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities