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BREATH Public
BEAST 2 repository for trees with transmission chains
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MutableAlignment Public
BEAST 2 package for alignments that can change during MCMC
Java GNU Lesser General Public License v2.1 UpdatedDec 8, 2025 -
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DensiTree Public
Automatically exported from code.google.com/p/densitree
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AlmostDistributions Public
Distributions for BEAST 2 that have infinite support
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obama Public
BEAST 2 package: OBAMA for Bayesian Aminoacid Model Averaging
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5rf Public
BEAST 2 package for the Rate Class Root Frequency Model
Java GNU General Public License v3.0 UpdatedApr 29, 2025 -
biceps Public
Bayesian Integrated Coalescent Epoch PlotS
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beastbooster Public
Tree Operators for BEAST 2
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FixedTreeAnalysis Public
BEAST 2 package for performing an analysis where the tree is fixed
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Mascot Public
Forked from nicfel/MascotBEAST2 implementation of the Masco approximation of the structured coalescent with forwards/backwards algorithm for node state calculation
Java GNU General Public License v3.0 UpdatedJan 11, 2024 -
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CorrelatedTrait Public
BEAST 2 package for tree sets
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substBMA Public
Forked from jessiewu/substBMAModelling across-site variation in the nucleotide substitution process.
Java GNU Lesser General Public License v2.1 UpdatedDec 5, 2022 -
EpiInf Public
Forked from tgvaughan/EpiInfBEAST 2 package for performing inference on epidemiological parameters using the exact likelihood.
Jupyter Notebook GNU General Public License v3.0 UpdatedOct 26, 2022 -
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