I turn biological chaos into code-powered clarity so scientists can science better.

A Nextflow Implementation of StaG-mwc (Metagenomic Workflow Collaboration)

• Nextflow adaptation of the comprehensive StaG-mwc workflow
• Quality control, host removal, and taxonomic profiling pipeline
• Optimized for UPPMAX clusters, adaptable to any HPC environment
• Streamlined metagenomic analysis workflow
• Continuous development to mirror original functionality

Gene Co-expression Network Analysis in Parascaris univalens Following Ivermectin Exposure

• Investigation of drug response mechanisms
• Gene co-expression network analysis
• Specialized for parasitic nematode research
• Focus on anthelmintic drug response

A comprehensive Nextflow pipeline for analyzing Ivermectin-exposed C. elegans (N2) RNA-Seq data

• Complete workflow from raw reads to differential expression analysis
• Specialized pipeline for drug response studies
• Integrated quality control and quantification
• Optimized for C. elegans transcriptomics

Analysis and Visualization of Drug Response in C. elegans

• Manhattan plot generation for drug exposure mapping
• Rug plots for resistance-implicated genes
• Integration of AndersenLab GWA mapping data
• Specialized visualization for drug response studies

One workspace for PhD course discovery and defence preparation

• Centralized search of doctoral courses across Sweden, filter by topic, university, location, and delivery mode (browse Courses)
• Deadline awareness with direct links to official application pages, easy sharing for supervisors and colleagues
• Backward-planned defence timeline from your target date, milestones, documents, and reminders in one place (open the Defence Planner)
• Regularly refreshed data and growing institutional coverage, with international expansion planned

Advancing bioinformatics through robust pipeline development and analysis. Open to collaborations!