Starred repositories
A toolkit for QC and visualization of ATAC-seq results.
MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis
STAR+WASP reduces reference bias in the allele-specific mapping of RNA-seq reads
Download FASTQ files from SRA or ENA repositories.
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Jupyter notebook based genomic data visualization toolkit.
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Multiple-replica multiple-condition Macs2 ChIPSeq wrapper
A list of interesting genome browser and genome visualization programs
Mirror of Daniel Zilberman Lab's bioinformatics tools
lncRNA scripts for Shea et al. 2019 Long noncoding RNAs in Brassica rapa L. following vernalization. Scientific Reports doi:10.1038/s41598-019-45650-w
Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every week.
Papers with code for single cell related papers
Powerfull download accelerator and video downloader
This is a flipbook that builds up plots with ggplot2.
Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA
Ceto is an NGS analysis system put together in a collaboration between the Bartom computational Lab, the Shilatifard lab, and other scientists at Northwestern University. Scroll down to the bottom …
Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
Chrome extension to append sci-hub.org to tab domain.