Make Bash utilities usable in Fish shell

🌸 A command-line fuzzy finder

Upgrade all the things

A gene fusion caller for long-read transcriptome sequencing data.

Complex structural variant detection from WGS data

Read-based phasing of genomic variants, also called haplotype assembly

A tool for somatic structural variant calling using long reads

Oxford Nanopore's Basecaller

Genome modeling and design across all domains of life

A curated list of awesome nanopore analysis tools.

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

To use Evo2 easily

Variant calling tool for long-read sequencing data

Copy number caller for long read data including SNV utilization

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

A bioinformatics tool for working with modified bases

fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector

Annotation and Ranking of Structural Variation

Conda recipes for the bioconda channel.

A Snakemake-based structural variant analysis workflow leveraging OctopusV's capabilities.

simple terminal UI for git commands

Structural variant and indel caller for mapped sequencing data

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

A python tool to detect internal tandem duplication with robust variant allele frequency estimation

Installation and usage for various tools for cancer genomics

SortMeRNA: next-generation sequence filtering and alignment tool

A genomic language model that distinguishes true structural variants from artifacts in long-read whole genome amplification

Language models identify chimeric artificial reads in NanoPore direct-RNA sequencing data.