A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.

An R package to plot interactive three-way differential expression analysis

Clone of the Bioconductor repository for the ResidualMatrix package.

🧪 🕸️ webr + lit + vite npm template

BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version

Cell signatures, with confidence.

R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)

GPT RStudio addins that enable GPT assisted coding, writing & analysis

Supporting data files and code for the publication by Shilts et al.

Single-Cell RNA Velocity Analysis on Yale HPC

upload big files to Zenodo using cURL, jq and bash

iSEE repository for the Shiny contest

Examples of custom panels for the iSEE package

Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-cell datasets.

Clone of the Bioconductor repository for the basilisk package.

Clone of the Bioconductor repository for the diffHic package.

Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.