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      samtoolssamtools PublicForked from samtools/samtools Tools (written in C using htslib) for manipulating next-generation sequencing data C 
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      bcftoolsbcftools PublicForked from samtools/bcftools This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib C 
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      tabixtabix PublicForked from samtools/tabix Note: tabix and bgzip binaries are now part of the HTSlib project. C 
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      picardpicard PublicForked from broadinstitute/picard A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format. Java 
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