Accurate and efficient spot detection for microscopy data

Stylus pen input for Java

Ressources of histopathology datasets

QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/

QuPath extension for Segment Anything Model (SAM)

Segment Anything Model API

AI Toolkit for Healthcare Imaging

A generic next-generation Java library for image processing

Image processing algorithms for ImgLib2

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

Read and write TIFF files.

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

Gradle plugins to automate the build process of JavaCPP and JavaCV

Create a custom runtime image of your non-modular application

Java library for parsing and rendering CommonMark (Markdown)

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

TiffSlide - cloud native openslide-python replacement based on tifffile

ImgLib2 RealTransform brought to QuPath

Supporting files for the Science study.

Create beautiful, publication-quality books and documents from computational content.

QuPath - Open-source bioimage analysis for research

An Engine-Agnostic Deep Learning Framework in Java

Specification for the bioimage.io model description file.

Java specific core utilities for interpretation of specification files of the bioimage model zoo

Website for codebender.org