Stars
A browser-based visualization framework for exploring and analyzing Zarr and NetCDF datasets.
A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.
This is a test of hosting a Hugo site on a Cloudflare Worker
collection of scripts for running large scale tasks on Microns Data
The simplest, highest-throughput Python interface to S3, GCS & Azure Storage, powered by Rust.
A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
Performance benchmarks of Zarr V3 implementations
Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data
Repository to hold schemas for annotations of volumetric imaging data focused on EM
Annotations for the FlyWire dataset.
Code for processing and analyzing the automated reconstruction of the Lee lab's Female Adult Nerve Cord EM dataset
Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord
Scientific Inkscape: Inkscape extensions for figure resizing and editing
Library for reading and writing large multi-dimensional arrays.
Image transformation, compression, and decompression codecs.
A dataframe-like wrapper around the seatable API.
N-dimensional NumPy array tiling and merging with overlapping, padding and tapering
EScp is a high performance transfer tool that uses a command line interface similar to scp.
Draw pretty maps from OpenStreetMap data! Built with osmnx +matplotlib + shapely
This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
The 4DN + BINA Tiered System of Microscopy Metadata Guidelines was developed by the 4DN Imaging Standards Working Group in collaboration with the BINA Data Management and Quality Control Working Gr…