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funlib.show.neuroglancer Public
Forked from funkelab/funlib.show.neuroglancerScripts and helpers for the neuroglancer WebGL viewer.
Python UpdatedNov 11, 2025 -
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dacapo Public
Forked from janelia-cellmap/dacapoA framework for easy application of established machine learning techniques on large, multi-dimensional images.
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 12, 2025 -
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funlib.persistence Public
Forked from funkelab/funlib.persistenceInterfaces for data (arrays and graphs) and storage formats (databases and file formats)
Python MIT License UpdatedDec 30, 2024 -
iohub Public
Forked from czbiohub-sf/iohubPythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 30, 2024 -
ossi-website Public
Forked from JaneliaSciComp/ossi-websiteWebsite showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.
Astro BSD 3-Clause "New" or "Revised" License UpdatedNov 12, 2024 -
secret-santa Public
Some scripts to create secret santa assignments
Python MIT License UpdatedOct 12, 2024 -
rust-pyn5 Public archive
Wrap rust-n5 functionality in a python importable library
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sarbor Public archive
A structure for combining a 3D arbor with a dense volumetric segmentation
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gunpowder Public
Forked from funkelab/gunpowderA library to facilitate machine learning on multi-dimensional images.
Python MIT License UpdatedFeb 7, 2024 -
funlib.geometry Public
Forked from funkelab/funlib.geometryA package for Coordinates, Rois and common operations in Coordinate spaces
Python MIT License UpdatedJan 3, 2024 -
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everything-will-be-fine Public archive
Semantic Segmentation DL@MBL-2023 team
MIT License UpdatedAug 29, 2023 -
A Fast, Extensible Progress Bar for Python and CLI
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zebrafish_experiments Public
scripts and configs for running zebrafish experiments
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mwatershed_agglom Public
scripts for blockwise global agglomeration using mutex watershed
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augment Public
Forked from funkey/augmentSimple elastic augmentation for ND arrays
Python MIT License UpdatedMar 22, 2023 -
fibsem-tools Public
Forked from janelia-cellmap/fibsem-toolsTools for handling FIB-SEM data and annotations
Python MIT License UpdatedMar 2, 2023 -
daisy Public
Forked from funkelab/daisyBlock-wise task scheduling for large nD volumes.
Python UpdatedFeb 17, 2023 -
cnnectome.conversion Public
scripts and helper functions for converting trained tensorflow cnnectome models to pytorch
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 29, 2022 -
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