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OSTA Public
"Orchestrating Spatial Transcriptomics Analysis with Bioconductor" book
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smoothclust Public
Method for segmentation of spatial domains with smooth boundaries and clustering in spatial transcriptomics
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WeberDivechaLCdata Public
Data package containing single-nucleus and spatially-resolved gene expression data from the human locus coeruleus (LC)
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HDCytoData Public
Data package containing high-dimensional cytometry data sets in SummarizedExperiment and flowSet formats
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regsplice Public
R package for detection of differential exon usage in RNA-seq and exon microarray data
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ggspavis Public
Visualization functions for spatial transcriptomics data in R
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STexampleData Public
Collection of spatial transcriptomics datasets in SpatialExperiment R/Bioconductor format
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git-github-rstudio-slides Public
Slides for lesson on "Git and GitHub for R Projects with RStudio"
UpdatedSep 19, 2025 -
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nnSVG Public
nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data
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OSTA-gh-pages Public
Backup of gh-pages branch from previous version of OSTA repo
UpdatedMay 13, 2025 -
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hypeR Public
Forked from montilab/hypeRAn R Package for Geneset Enrichment Workflows
R GNU General Public License v3.0 UpdatedApr 17, 2025 -
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diffcyt Public
R package for differential discovery analyses in high-dimensional cytometry data
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OSTA-resources Public
Resources for "Principles of Spatial Transcriptomics Analysis with Bioconductor" book
HTML UpdatedFeb 1, 2025 -
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