Stars
Breakthrough Method for Agile Ai Driven Development
A curated list of awesome nanopore analysis tools.
An AI-powered task-management system you can drop into Cursor, Lovable, Windsurf, Roo, and others.
Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.
Local persistent memory store for LLM applications including claude desktop, github copilot, codex, antigravity, etc.
Orchestrate Claude Code, Codex, and Gemini sessions on a multiplayer canvas. Manage git worktrees, track AI conversations, and visualize your team's agentic work in real-time.
Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
A virtual lab of LLM agents for science research
Nanopore demultiplexing, QC and alignment pipeline
Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)
SquiggleKit: A toolkit for manipulating nanopore signal data
zipdetails - Display details about the internal structure of Zip files.
A modern, high customizable, responsive Jekyll theme for documentation with built-in search.
Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* et al., Nature Biotech 2021)
Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
Pod5: a high performance file format for nanopore reads.
A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency
patbohn / tombo_bam_input
Forked from nanoporetech/tomboAllows feeding in own alignments (not overly optimized)
Tools for plotting methylation data in various ways
Methylation/modified base calling separated from basecalling.