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NanoCaller Public
Forked from WGLab/NanoCallerVariant calling tool for long-read sequencing data
Python MIT License UpdatedMar 22, 2023 -
SV_GWAS Public
Forked from GRONINGEN-MICROBIOME-CENTRE/SV_GWASThis repository contains the code used for SV-GWAS project
R UpdatedDec 21, 2022 -
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Foreign Contamination Screening caller scripts and documentation
Other UpdatedNov 3, 2022 -
rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedNov 3, 2022 -
GO_KEGG_annotation Public
Forked from youngDouble/GO_KEGG_annotationGO KEGG annotation
Python UpdatedOct 19, 2022 -
RNASeq_Workshop Public
Forked from kmeaton/RNASeq_WorkshopThis repository contains a walkthrough of how to analyze RNA-Seq data, using a sample dataset from Bernal et al. 2020 (Science Advances). This repository will be used in the RNA-Seq data analysis w…
R GNU General Public License v3.0 UpdatedAug 12, 2022 -
Polygonia_calbum_genomics Public
Forked from bioinfowheat/Polygonia_calbum_genomicsShell UpdatedJun 4, 2021 -
sv-benchmark Public
Forked from PacificBiosciences/sv-benchmarkPublic Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
UpdatedFeb 3, 2021 -
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pcap-gwas Public
Forked from gmv23/pcap-gwasRelevant scripts for manuscript: 'Genome-wide association study in New York Phytophthora capsici isolates reveals loci involved in mating type and mefenoxam sensitivity'
R UpdatedJul 16, 2020 -
Custom-Repeat-Library Public
Forked from megbowman/Custom-Repeat-LibraryCode for the Custom Repeat Library protocol as described: http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/Repeat_Library_Construction-Advanced
Perl UpdatedMar 5, 2017 -
centromere_seeker Public
Forked from cryancampbell/centromere_seekerbash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)
Shell UpdatedDec 1, 2016
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