Genome data visualizations

This is the standalone version of the EviAnn pipeline

paml documentation and tutorials

a bash pipeline for RAD sequencing

整理常用的群体遗传学分析流程和脚本

RAGFlow is a leading open-source Retrieval-Augmented Generation (RAG) engine that fuses cutting-edge RAG with Agent capabilities to create a superior context layer for LLMs

Python scripts for CT(comparative transcriptomics), PT(phylotranscriptomics) and CG(comparative genomics).

TreeBeST: Tree Building guided by Species Tree

Local install

Script to help assessing the evolutionary history of a TE family

De novo genome assembly, phylogenetics, comparative genomics analysis, and functional variant annotation

Scripts for analysis and figure preparation for Shafer et. al. Gene family evolution underlies cell type diversification in the hypothalamus of teleosts

An extensible python-based genomics visualization engine

DNA multiple sequence aligner, official version from Penn State's Miller Lab

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.