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mmap'ed access to reference files #40

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mmap'ed access to reference files #40

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49c2b85
New cmd line option -z / use mmap
ilveroluca Dec 22, 2014
ef237dc
Implement mmap access to bwt
ilveroluca Dec 22, 2014
586d916
Lock mmap directly as it's created
ilveroluca Dec 23, 2014
ec70a60
Encapsulate file unmapping in a bwt_ function
ilveroluca Dec 23, 2014
654ad45
mmap for pac file
ilveroluca Dec 23, 2014
0a3c07b
verr_fatal, taking a va_list argument
ilveroluca Dec 23, 2014
e7df13f
perror_fatal function
ilveroluca Dec 23, 2014
66832ad
mmap suffix array file
ilveroluca Dec 23, 2014
c60374e
More informative mmap error message
ilveroluca Dec 23, 2014
f65dcc0
Comments
ilveroluca Dec 23, 2014
d55fc57
Use madvise to inform the kernel we'll need the memory soon
ilveroluca Dec 23, 2014
d6910e5
Fix problem emerged during rebase
ilveroluca Jan 23, 2015
87e9513
Fix rebase mess
ilveroluca Jan 23, 2015
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More informative mmap error message
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@ilveroluca
ilveroluca committed Jan 23, 2015
commit c60374e52c8b9fa138de2e5d5c97b25c6491076c
2 changes: 1 addition & 1 deletion bwt.c
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Expand Up @@ -43,7 +43,7 @@
#include <sys/types.h>
#include <sys/stat.h>
#include <fcntl.h>
//#include <unistd.h>
#include <errno.h>

void bwt_gen_cnt_table(bwt_t *bwt)
{
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