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Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Scripts used in the analyses of "An optimized variant prioritization process for rare disease diagnostics: recommendations for Exomiser and Genomiser"
FastAPI Best Practices and Conventions we used at our startup
Deepnote is a drop-in replacement for Jupyter with an AI-first design, sleek UI, new blocks, and native data integrations. Use Python, R, and SQL locally in your favorite IDE, then scale to Deepnot…
A modular annotation tool for genomic variants
Moneyflow: Personal Finance Data Interface for Power Users (supporting backends like Monarch Money, YNAB)
Complex structural variant visualization for HiFi sequencing data
A set of ready to use scientific skills for Claude
🔍 Lookup classes and instantiate them with style
Write reproducible code for getting and processing ChEMBL
Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
Best and simplest tool for website change detection, web page monitoring, and website change alerts. Perfect for tracking content changes, price drops, restock alerts, and website defacement monito…
A Kubernetes-based task executor for the Task Execution Service (TES) specification
rapids_singlecell: GPU-accelerated framework for scRNA analysis
VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
Developer-friendly OSS embedded retrieval library for multimodal AI. Search More; Manage Less.
An experimental AI agent workflow.
Semantic search and document parsing tools for the command line
Model Context Protocol server for gnomAD (Genome Aggregation Database) GraphQL API
A collection of Jupyter notebooks, each walking you through a common example of bibliometric analysis using scholarly data from the OpenAlex API.
The ska-mtdna.py script leverages SKA and FastTree to allow for rapid and automated haplotype analysis of mitochondrial genomes.
Intelligent automation and multi-agent orchestration for Claude Code
An orchestrated sub agent dev team powered by claude code
A tool that validates academic paper references
Automatic resource and metadata tracking for IR experiments.
Fair-code workflow automation platform with native AI capabilities. Combine visual building with custom code, self-host or cloud, 400+ integrations.
The highest quality SaaS starter with Next.js, Supabase, Stripe, and shadcn/ui
A currency conversion MCP server