Google's Engineering Practices documentation

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Rust library and CLI to export an Obsidian vault to regular Markdown

Collection of bioinformatics training materials

🔯 Modern, batteries-included Hugo theme for creating beautiful doc, blog and static websites

Nail is an Alignment Inference tooL

Setup all the things

Library and command-line utility for rendering projects templates.

R's data.table package extends data.frame:

Fast similarity search using DuckDB

🦆 A curated list of awesome DuckDB resources

More efficient tidyverse code, using polars in the background

Polars R bindings

Advanced and Fast Data Transformation in R

Lightning Fast Serialization of Data Frames for R

🌳 rpix: R Interface for pixi

An Extensible Suite of High-Performance and Low-Dependency Packages for Statistical Computing and Data Manipulation in R

Pretty, minimal and fast ZSH prompt

Bioinformatics tool for Locus Visualisation

An interactive app that loads plasmid antiphage defense metadata and edge data from Parquet files and renders a GPU-accelerated network visualization using Graphology and Sigma.js.

A complete toolkit for connecting R and LLMs

R formatter and language server

Quickly turn your analysis directory into a Docker image.

High accuracy RAG for answering questions from scientific documents with citations

Fast and accurate protein domain segmentation using Invariant Point Attention

HMMER: biological sequence analysis using profile HMMs

Logan Unitigs and Contigs

Computes affinity between two entities based on their co-occurrence