Stars
Produce scientific figures in R that look exactly how you want
Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
Scientific Inkscape: Inkscape extensions for figure resizing and editing
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Salt to configure Linux and Mac (x86_64, arm64) for the BBS
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
A comprehensive guide on how to create beautiful scientific figures for technical publications, presentations, and posters
A data framework for biology. Makes your data queryable, traceable, reproducible, and FAIR. One API: lakehouse, lineage, feature store, ontologies, LIMS, ELN.
Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells and cells with shared gene-expression programs.
A curated list of Quarto talks, tools, examples & articles! Contributions welcome!
Algorithmically create or extend categorical colour palettes
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
An open access book on scientific visualization using python and matplotlib
An inversion of renv for low effort reproducible R package libraries
pre-processing-r / chk
Forked from poissonconsulting/chkAn R package for developers to check user-supplied function arguments
minimal example implementations for bioinformatics workflow managers
Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
A Collaborative list of things to know before submitting to CRAN