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nf-core-rnaseq Public
Forked from nf-core/rnaseqRNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Nextflow MIT License UpdatedDec 10, 2025 -
nf-requests Public
Nextflow plugin for https requests
Groovy Apache License 2.0 UpdatedOct 24, 2025 -
nf-flu Public
Forked from peterk87/nf-fluInfluenza genome analysis Nextflow workflow
Nextflow MIT License UpdatedSep 15, 2025 -
phacnml-mikrokondo Public
Forked from phac-nml/mikrokondoA simple pipeline for bacterial assembly and quality control
Nextflow MIT License UpdatedSep 15, 2025 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
Groovy Apache License 2.0 UpdatedJul 24, 2025 -
nextflowio-training Public
Forked from nextflow-io/trainingNextflow training material
Nextflow Other UpdatedApr 10, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMar 28, 2025 -
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nf-modules-demo Public
An example private modules library built using nf-core tooling
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quote Public
Forked from maxhumber/quoteGoodreads Quote API
Python MIT License UpdatedOct 25, 2024 -
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platform-docs Public
Forked from opentargets/platform-docshttps://platform-docs.opentargets.org/
Other UpdatedAug 6, 2024 -
cz-conventional-gitmoji Public
Forked from ljnsn/cz-conventional-gitmojiA commitizen plugin that combines gitmoji and conventional commits.
Python UpdatedJul 26, 2024 -
nf-test Public
Forked from askimed/nf-testSimple test framework for Nextflow pipelines
Java MIT License UpdatedJul 10, 2024 -
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copier-nextflow Public
A modular best-practices Nextflow template built using Copier
Jinja MIT License UpdatedJun 10, 2024 -
tools Public
Forked from nf-core/toolsPython package with helper tools for the nf-core community.
Python MIT License UpdatedJun 2, 2024 -
sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedMay 5, 2024 -
pycytominer Public
Forked from cytomining/pycytominercytominer python package
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 26, 2024 -
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authlib Public
Forked from authlib/authlibThe ultimate Python library in building OAuth, OpenID Connect clients and servers. JWS,JWE,JWK,JWA,JWT included.
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 11, 2024 -
RNAFramework Public
Forked from dincarnato/RNAFrameworkRNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
Perl GNU General Public License v3.0 UpdatedMar 16, 2024 -
vscode-extensionpack Public
Forked from nf-core/vscode-extensionpackA VSCode extension pack for nf-core developers.
MIT License UpdatedFeb 25, 2024 -
pycytominer-feedstock Public
Forked from conda-forge/pycytominer-feedstockA conda-smithy repository for pycytominer.
BSD 3-Clause "New" or "Revised" License UpdatedJan 27, 2024 -
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conda-smithy Public
Forked from conda-forge/conda-smithyThe tool for managing conda-forge feedstocks.
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 7, 2023 -
copier Public
Forked from copier-org/copierLibrary and command-line utility for rendering projects templates.
Python MIT License UpdatedNov 3, 2023 -
cookiecutter-poetry Public
Forked from fpgmaas/cookiecutter-poetryA modern cookiecutter template for Python projects that use Poetry for dependency management
Python MIT License UpdatedOct 26, 2023 -
CytoTable Public
Forked from cytomining/CytoTableTransform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 22, 2023 -
simplenextflow Public
A simpler nextflow project template based of nf-core
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