A program for the Maximum-likelihood analysis of population genomic data.

Strelka2 germline and somatic small variant caller

An awesome list of workflow systems

Scripts and notes for singularity containers used for bioinformatics analyses

How to use Singularity!

Format click help output nicely with rich.

Python library to handle Gene Ontology (GO) terms

Supercomputing. Seamlessly. Open, Interactive HPC Via the Web

A free and open-source DNA Sequencing/Visualization software for bioinformatics research.

Normalization of RNA-seq gene expression

Turn an existing conda environment into a Singularity container

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

Read DNA sequences from colourful Microsoft Word documents

An ensemble structural variant calling pipeline driven by snakemake using multiple SV and CNV callers.

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Codon-aware aligner

Algorithm and data structure articles for https://cp-algorithms.com (based on http://e-maxx.ru)

Various utility functions for Seurat single-cell analysis

Structural variation caller using third generation sequencing

Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Edit MediaWiki pages from Vim!

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.

https://www.sc-best-practices.org

IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.

Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)