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Backsub Public
Forked from SchapiroLabor/Background_subtractionBackground subtraction for COMET platform
Python MIT License UpdatedNov 5, 2025 -
nf_molkart Public
Forked from nf-core/molkartFork for working on first release of nf-core/molkart
Nextflow MIT License UpdatedOct 21, 2025 -
advanced-git-sample-repository Public
Forked from ssciwr/advanced-git-sample-repositorySample repository for the SSC Course "Advanced Topics in version control with Git"
Python MIT License UpdatedSep 15, 2025 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedApr 3, 2025 -
variantbenchmarking Public
Forked from nf-core/variantbenchmarkingPipeline to evaluate and validate the accuracy of variant calling methods in genomic research
Nextflow MIT License UpdatedMar 26, 2025 -
test-datasets-modules Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedMar 26, 2025 -
nfcore_logos Public
Forked from nf-core/logosHost nf-core logos and templates for making new logos
MIT License UpdatedMar 26, 2025 -
nf_mcmicro Public
Forked from nf-core/mcmicroAn end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
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mcmicro Public
Forked from labsyspharm/mcmicroMultiple-choice microscopy pipeline
Nextflow MIT License UpdatedJan 31, 2025 -
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biocontainers Public
Forked from BioContainers/containersBioinformatics containers
Dockerfile Apache License 2.0 UpdatedNov 3, 2024 -
nfcore_website Public
Forked from nf-core/websiteCode and files for the main nf-core website.
Astro MIT License UpdatedOct 4, 2024 -
minerva-example-test Public
Forked from thejohnhoffer/minerva-story-templateA straightforward template for Minerva Story
HTML MIT License UpdatedAug 15, 2024 -
nextflow_website Public
Forked from nextflow-io/websiteNextflow public web site
HTML UpdatedJul 4, 2024 -
boms Public
Forked from sciai-lab/bomsA tool for segmenting cells in imaging-based spatial transcriptomics data
C++ MIT License UpdatedMar 19, 2024 -
QuPath_Annotation_to_Quantification_file Public
Forked from josenimo/06_QuPath_Annotation_to_AnnDataannotate cells wether they are inside a QuPath annotation. Expects QuPath geojson export from the same image.
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mcmicro_hackathon_2022 Public
Forked from SchapiroLabor/mcmicro_hackathon_2022Description for the Background subtraction module from the MCMICRO hackathon 2022
HTML MIT License UpdatedOct 22, 2022 -
mcmicro-ilastik Public
Forked from labsyspharm/mcmicro-ilastikIlastik segmentation module for mcmicro
Python UpdatedAug 11, 2022 -
palom Public
Forked from SchapiroLabor/palomPiecewise alignment for layers of mosaics
Python UpdatedJun 7, 2022
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