gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation

Save, load, host, and share AI model checkpoints without slowing down training. Host on Lightning AI or your own cloud with enterprise-grade access controls.

A standard library for biological research.

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Curated list of interactive ML demos

Opinionated provides simple, clean stylesheets for plotting with matplotlib and seaborn.

Transformer-based protein function Annotation with joint feature-Label Embedding

A community-maintained Python framework for creating mathematical animations.

Python-centric Cookiecutter for Molecular Computational Chemistry Packages

Summaries and study materials I've written over the course of my studies at ETH Zurich

My implementation of the original GAT paper (Veličković et al.). I've additionally included the playground.py file for visualizing the Cora dataset, GAT embeddings, an attention mechanism, and entr…

Drug design, Machine learning, MPNN

GraphDTA: Predicting drug-target binding affinity with graph neural networks

A powerful and flexible machine learning platform for drug discovery

Drug Response Variational Autoencoder

A highly efficient implementation of Gaussian Processes in PyTorch

Pacmed Labs experiments on uncertainty estimation, focusing on unbalanced tabular data and classification tasks.

Collection of generative models, e.g. GAN, VAE in Pytorch and Tensorflow.