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6 followers · 15 following

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johnvusich/README.md

Hey there!

I’m John Vusich. I am a PhD candidate in Eran Andrechek's lab at Michigan State University. My research explores broad topics in cancer genomics and epigenomics, as well as normal development, using mouse models of breast cancer. Prior to starting my PhD, I was a research technician in the cancer immunology lab of Wei-Zen Wei at Karmanos Cancer Institute.

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  1. Mammary-E2F5CKO-Pregnancy Mammary-E2F5CKO-Pregnancy Public

    Repository for data and analysis for mammary E2F5CKO paper

    Python

  2. circdna_e2f5 circdna_e2f5 Public

    Scripts for identification of ecDNA in MMTV-Cre E2F5-flox mouse model of breast cancer

    Shell

  3. nf-core/rnaseq nf-core/rnaseq Public

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow 1.1k 803

  4. nf-core/cutandrun nf-core/cutandrun Public

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    Nextflow 103 62