Skip to content
View jmarshall's full-sized avatar

Organizations

@samtools @pysam-developers @ga4gh @bioconda

Block or report jmarshall

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Showing results

act as self-hosted runner

Go 358 22 Updated Dec 23, 2025

Python language bindings for bwa

Cython 11 1 Updated Nov 24, 2025

C++ binding for SAM/BAM files

C++ 9 1 Updated Jun 26, 2024

ldd as a tree

C 2,750 64 Updated Jun 21, 2024

Tool for plotting sequencing data along genomic coordinates.

Python 335 15 Updated Dec 12, 2025

A blazingly fast, stunningly beautiful, exceptionally powerful git branch viewer for Vim/Neovim.

Vim Script 885 28 Updated Mar 19, 2025

📝 Today I Learned

Vim Script 13,995 766 Updated Dec 23, 2025

dadbod.vim: Modern database interface for Vim

Vim Script 4,250 147 Updated May 11, 2025

Cloud-native genomic dataframes and batch computing

Python 1,042 257 Updated Dec 16, 2025

:octocat: Static checker for GitHub Actions workflow files

Go 3,478 198 Updated Dec 23, 2025

Debug your GitHub Actions via SSH by using tmate to get access to the runner system itself.

JavaScript 3,400 323 Updated Dec 18, 2025
Vim Script 12 1 Updated Aug 2, 2023

Distributed, offline-first bug tracker embedded in git

Go 9,601 292 Updated Dec 24, 2025

Open Source Soldering Iron firmware

C 7,989 776 Updated Dec 15, 2025

Probably the sharpest git repository organizer & rebase/merge workflow automation tool you've ever seen

Python 1,046 57 Updated Dec 23, 2025

An alternative app to watch the Twitch streaming service for Android TV devices

766 3 Updated Aug 8, 2024

portion, a Python library providing data structure and operations for intervals.

Python 514 37 Updated Dec 11, 2025

Bash completion support for conda

Python 164 8 Updated Oct 1, 2023

Protect your SSH keys with your Mac's Secure Enclave

Swift 7,950 182 Updated Dec 14, 2025

Collection of compression related Go packages.

Go 415 28 Updated Sep 4, 2023

The official Vim repository

Vim Script 39,489 5,903 Updated Dec 23, 2025

Run your GitHub Actions locally 🚀

Go 67,731 1,806 Updated Dec 1, 2025

The platform independent header allowing to compile any C/C++ code containing ARM NEON intrinsic functions for x86 target systems using SIMD up to AVX2 intrinsic functions

C 480 157 Updated Oct 23, 2025

A translator from Intel SSE intrinsics to Arm/Aarch64 NEON implementation

C++ 1,467 231 Updated Dec 22, 2025

Conda recipes for the bioconda channel.

Shell 1,766 3,688 Updated Dec 24, 2025

Bioinformatics I/O libraries in Rust

Rust 638 65 Updated Dec 18, 2025

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…

Shell 162 15 Updated Nov 21, 2025

The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.

LLVM 36,078 15,577 Updated Dec 24, 2025

Smaller, easier, more powerful, and more reliable than make. An implementation of djb's redo.

Python 1,832 133 Updated Nov 7, 2023

Bayesian haplotype-based mutation calling

C++ 322 36 Updated Nov 27, 2025
Next