Skip to content

Actions: jkbonfield/samtools

Actions

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
105 workflow runs
105 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #204: Commit ff1862d pushed by jkbonfield
7m 25s UMI-import-export
UMI-import-export
7m 25s
Add missing sam_global_args_free calls. Windows/MinGW-W64 CI #203: Commit 3b56927 pushed by jkbonfield
7m 47s sam_global_args_free
sam_global_args_free
7m 47s
Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #202: Commit 8e96987 pushed by jkbonfield
5m 48s UMI-import-export
UMI-import-export
5m 48s
Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #201: Commit 9962ec7 pushed by jkbonfield
7m 5s UMI-import-export
UMI-import-export
7m 5s
Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #200: Commit f3e07bb pushed by jkbonfield
6m 54s UMI-import-export
UMI-import-export
6m 54s
Improve samtools fasta/fastq man page. Windows/MinGW-W64 CI #199: Commit 4d9635c pushed by jkbonfield
7m 13s UMI-import-export
UMI-import-export
7m 13s
Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #198: Commit 4fe2b9f pushed by jkbonfield
7m 13s UMI-import-export
UMI-import-export
7m 13s
Add UMI support to samtools fastq / import. Needs htslib#1960 Windows/MinGW-W64 CI #197: Commit b7a4983 pushed by jkbonfield
7m 14s UMI-import-export
UMI-import-export
7m 14s
Add UMI support to samtools fastq / import. Needs htslib#XXXX Windows/MinGW-W64 CI #196: Commit 63978a6 pushed by jkbonfield
7m 3s UMI-import-export
UMI-import-export
7m 3s
Add a link to samtools.1 manpage for global opts in usage. Windows/MinGW-W64 CI #195: Commit 15ecafe pushed by jkbonfield
6m 58s doc-global-opts
doc-global-opts
6m 58s
Speed up samtools consensus by 20-25% for long-read data. Windows/MinGW-W64 CI #194: Commit 7a68058 pushed by jkbonfield
6m 59s consensus-C-namespace
consensus-C-namespace
6m 59s
Remove use of C variables starting in _ from bam_consensus.c. Windows/MinGW-W64 CI #193: Commit e2b6b15 pushed by jkbonfield
7m 20s consensus-C-namespace
consensus-C-namespace
7m 20s
Remove use of C variables starting in _ from bam_consensus.c. Windows/MinGW-W64 CI #192: Commit e378562 pushed by jkbonfield
6m 49s consensus-C-namespace
consensus-C-namespace
6m 49s
Remove use of C variables starting in _ from bam_consensus.c. Windows/MinGW-W64 CI #191: Commit 0ccee2c pushed by jkbonfield
7m 11s consensus-C-namespace
consensus-C-namespace
7m 11s
Fix mpileup -a bug Windows/MinGW-W64 CI #190: Commit 4a76459 pushed by jkbonfield
7m 2s fix_2227
fix_2227
7m 2s
Add reference to the REFERENCE SEQUENCES section Windows/MinGW-W64 CI #189: Commit 9af9990 pushed by daviesrob
6m 27s no-ebi-ref
no-ebi-ref
6m 27s
Adjust REF_PATH text so it mentions ref-cache Windows/MinGW-W64 CI #188: Commit 26389ec pushed by daviesrob
6m 57s no-ebi-ref
no-ebi-ref
6m 57s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #187: Commit bb730cc pushed by jkbonfield
6m 33s cram-merge
cram-merge
6m 33s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #186: Commit be048f3 pushed by jkbonfield
6m 49s cram-merge
cram-merge
6m 49s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #185: Commit be7005f pushed by jkbonfield
6m 33s cram-merge
cram-merge
6m 33s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #184: Commit 5139029 pushed by jkbonfield
6m 31s cram-merge
cram-merge
6m 31s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #183: Commit 61211dc pushed by jkbonfield
6m 35s cram-merge
cram-merge
6m 35s
Protect against merging CRAM files with different headers. Windows/MinGW-W64 CI #182: Commit 3b5a48d pushed by jkbonfield
7m 9s cram-merge
cram-merge
7m 9s
Don't use consensus N for "*" calls that are of insufficient depth. Windows/MinGW-W64 CI #181: Commit e3af94c pushed by jkbonfield
6m 51s consensus-N
consensus-N
6m 51s
Add multi-threading to samtools consensus. Needs htslib#1875 Windows/MinGW-W64 CI #180: Commit ba88d45 pushed by jkbonfield
6m 46s region-walk
region-walk
6m 46s