Custom code used in Le Merre and Heining et al.: "A Prefrontal Cortex Map based on Single Neuron Activity" (https://doi.org/10.1101/2024.11.06.622308 ).

GPU-accelerated activation likelihood estimation meta-analysis (a GPU wrapper for NiMARE)

Standard human cortical surface-based template for neuroimaging analyses (Freesurfer, left-right-symmetric, ~32k vertices) v

Generalized Additive Models in R: A Free Interactive Course

Official codebase for "Brain Harmony: A Multimodal Foundation Model Unifying Morphology and Function into 1D Tokens" (NeruIPS 2025).

Official codebase for "Brain-JEPA: Brain Dynamics Foundation Model with Gradient Positioning and Spatiotemporal Masking" (NeurIPS 2024, Spotlight).

Interactive roadmaps, guides and other educational content to help developers grow in their careers.

microstructural mapping of the human cortex using diffusion MRI

QSMxT is an end-to-end software toolbox for Quantitative Susceptibility Mapping.

Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure

Automatic BIDS architecture

Two-dimensional subcortex data viz package

BigBrainWarp

Organize ideas and collaborate using Markdown, a lightweight language for text formatting.

Gradientography pipeline for task fMRI

Public release of The Cole-Anticevic Brain-wide Network Partition (CAB-NP)

A toolbox for comparing brain maps

"A Convergent Single-Loop Algorithm for Relaxation of Gromov-Wasserstein in Graph Data" in ICLR 2023.

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Neuro Imaging Chart of AI-based Imaging Biomarkers

Metric learning algorithms in Python

Dimension Insensitive Euclidean Metric (DIEM)

A library for efficient similarity search and clustering of dense vectors.

A python library for computing distances.

Tutorials for the HTCondor Python Bindings

Code to analyse structural covariance brain networks using python.