An Engine-Agnostic Deep Learning Framework in Java

Tribuo - A Java machine learning library

PDV: an integrative proteomics data viewer

Modern JavaFX CSS theme collection with additional controls.

A curated list of free courses with certifications. Also available at https://free-certifications.com/

Config files for my GitHub profile.

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

中国科学技术大学软件学院离散数学课程

A standalone java tool for analyzing ms/ms fragmentation data.

TopPIC suite is a software suite for proteoform identification by top-down mass spectrometry.

XChart is a light-weight Java library for plotting data.

Concurrent Radix and Suffix Trees for Java

Universal Deconvolution of Mass and Ion Mobility Spectra

All Algorithms implemented in Rust

A cross-platform GUI library for Rust, inspired by Elm

Learn Rust with examples (Live code editor included)

Mass spectrometry data visualization

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

.NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

A tool for summarizing open search results

A modular, python-based framework for mass spectrometry. Powered by nbdev.

An tandem mass spectrometry (MS/MS) sequence database search tool.

Apache Commons Collections

A graph-focused data visualisation and interactive analysis application.

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

Stable Diffusion web UI