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Initial version of Automated Phylogenetic Inference System in preparation for public release

Ruby 3 Updated Apr 3, 2015

Metagenomic functional annotation pipeline, used within the Human Microbiome Project

Perl 4 2 Updated Jan 31, 2011

Metagenomic functional annotation pipeline, used within the Human Microbiome Project

Perl 10 9 Updated Oct 1, 2014

PhylOTU identifies microbial OTUs from metagenomic data

Perl 24 5 Updated May 16, 2013

METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics

PHP 26 10 Updated Mar 21, 2013

A free software for taxonomic classification of metagenomic sequences with machine learning techniques

Python 11 4 Updated Feb 10, 2015