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cov-lineages / pangolin

Software package for assigning SARS-CoV-2 genome sequences to global lineages.

Python 443 106 Updated Nov 10, 2025

phac-nml / NML_Nowcast

HTML 1 Updated Jan 31, 2024

usegalaxy-eu / ena-cog-uk-wfs

Collection of scripts for automated SARS-CoV-2 genome surveillance.

Python 23 8 Updated Sep 19, 2023

snakemake-workflows / snakemake-workflow-template

A template for standard compliant snakemake-workflows

Python 115 40 Updated Oct 26, 2025

C3BI-pasteur-fr / UTechSCB-SCHNAPPs

Shiny app for the analysis of single cell data

R 26 2 Updated Nov 11, 2025