Stratified LD Score Regression (S-LDSC) for sparse annotation

Reference mapping for single-cell genomics

Generate embeddings from large-scale graph-structured data.

Graph Neural Network Library for PyTorch

Test genes for Spatial Variation

POT : Python Optimal Transport

Multimodal Data (.h5mu) implementation for Python

Annotated data matrices.

Personal Blog using Hydeout

Deep universal probabilistic programming with Python and PyTorch

Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B

Tutorials for SIMBA (https://github.com/pinellolab/simba)

Vectorizers for a range of different data types

A python module of handy tools and functions, mainly for ML and Kaggle

Structural variant and indel caller for mapped sequencing data

Connect to a LSF main node directly or trough a ssh jump node, launch a jupyter notebook via bsub and open automatically a tunnel. The name of the connection can be used to reestablish the connect…

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)