The best ChatGPT that $100 can buy.

Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.

Similarity network fusion in Python

A simple race chart + dashboard for posters in the image.sc forum under the ome-zarr tag

📓 Quarto Format for ABNT Theses and Dissertations

Multi-subject Single Cell Deconvolution

The AnnSQL package enables SQL based queries on AnnData objects.

Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Gene group activity utility functions for Scanpy

UI Plugin for KOReader by @elfbutt and @joshuacant

An ebook reader application supporting PDF, DjVu, EPUB, FB2 and many more formats, running on Cervantes, Kindle, Kobo, PocketBook and Android devices

A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations

An efficient CLI to extract sequences from the SRA

a network-based method to reconstruct active signalling pathways from phosphoproteomics datasets

R package implementation of Milo for testing for differential abundance in KNN graphs

Application of multi-omics integration analysis using the Multi Omics Factor Analysis (MOFA) package in R.

fastqc multqc and blast analysis pipeline for nextflow course

Datasets with embeddings and other representations for all proteins in Uniprot/Swiss-Prot

an attempt to convert epitocore pipeline into a nextflow one - part 1 is being done as a project assignment

Projeto do curso de nf

[under development] Simplified TranscriptClean implementation into Nextflow. Nf-core template implementation of modules and workflows are being developed in the repo TranscriptClean-NF.

Pipeline de classificação de FMA

First pipeline. Project with bcftools and python.

mitochondrial assembly

Projeto final do programa de treinamento com a ferramenta Nextflow, realizada em Natal no ano de 2025.