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studying cancer genomics
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studying cancer genomics

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Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy

Lua 560 136 Updated Nov 12, 2025

Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

Python 178 31 Updated Nov 10, 2025

aider is AI pair programming in your terminal

Python 38,417 3,658 Updated Nov 2, 2025

This VSCode extension allows users to quickly toggle the sort order of files in the Explorer panel between 'modified' and 'default'.

TypeScript 2 Updated Mar 15, 2025

Application Configuration files (xmonad, bash, etc)

Lua 3 Updated Nov 7, 2025

A MCP (Model Context Protocol) server for PowerPoint manipulation using python-pptx. This server provides tools for creating, editing, and manipulating PowerPoint presentations through the MCP prot…

Python 1,232 167 Updated Oct 17, 2025

The AI coding agent built for the terminal.

TypeScript 32,900 2,616 Updated Nov 15, 2025

An extremely fast Python type checker and language server, written in Rust.

Python 13,466 135 Updated Nov 12, 2025
Perl 184 56 Updated Jun 20, 2023

Plugins for the Ensembl Variant Effect Predictor (VEP)

Perl 162 122 Updated Sep 24, 2025

A curated list of essential tutorials, resources, and learning materials for Cursor Editor - the AI-first code editor for the AI-first world.

7 Updated Jan 21, 2025

👨‍💻 Python cleanup script for macOS

Python 2,257 89 Updated Oct 4, 2025

PhylogicNDT dockcer for clonal evolution analysis

Shell 1 Updated Oct 27, 2022

Lightweight coding agent that runs in your terminal

Rust 50,556 6,314 Updated Nov 15, 2025

An AI companion for reading papers.

JavaScript 1,564 204 Updated Apr 18, 2025

Investigate copy number alterations co-occurred in bi-allelic BRCA1/2 tumors, and identify genes enhancing proliferation in BRCA1-null and BRCA2-null cells

R 1 Updated Oct 9, 2023

LLM inference in C/C++

C++ 89,842 13,707 Updated Nov 15, 2025

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

TypeScript 42,471 2,832 Updated Nov 15, 2025

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 2,221 356 Updated Oct 14, 2025

LLM plugin to access Google's Gemini family of models

Python 394 46 Updated Oct 11, 2025

Uses LLM to perform optical character recognition (OCR)

Python 1 Updated Feb 7, 2025

Small Dataset Benchmarks on the Dataset of Datasets UCI++

Jupyter Notebook 93 17 Updated Jul 29, 2022

Read-only mirror of https://git.sr.ht/~rjarry/aerc. This repository does not accept pull requests. Please send contributions to https://lists.sr.ht/~rjarry/aerc-devel.

Go 201 8 Updated Nov 5, 2025
Python 39 23 Updated Jul 18, 2025

jimmy's dot files

Emacs Lisp 386 31 Updated Jul 7, 2025

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Python 20,833 2,010 Updated Nov 15, 2025

A conda-forge distribution.

Shell 8,824 450 Updated Nov 5, 2025

Speech Note Linux app. Note taking, reading and translating with offline Speech to Text, Text to Speech and Machine translation.

C++ 1,229 47 Updated Oct 29, 2025

Offline Speech Recognition with OpenAI Whisper and TensorFlow Lite for Android

C++ 570 96 Updated Feb 12, 2025
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