Remove unnecessary XZ library exclusion from build.gradle (#1768)

SBX options name changes

* Improve testing for gzipped files

* Extend BufferedInputStream to insure available() never returns 0 until we are at EOF.  A workaround for a Java bug.  Fixes #1693

Don't create genome data directory if seq & annotation download optio…

…ns are false

Account for hard clipping in reported read sequence length. See #1658

rollback

genome download dialog refinements

Redo ENCODE menu items to eliminate need for a section label. The lab…

…el is not seen in the production Mac build

new launcher test

ignore htsget bam test -- server no longer active