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bactopia Public
Forked from bactopia/bactopiaA flexible pipeline for complete analysis of bacterial genomes
Nextflow MIT License UpdatedJan 23, 2024 -
pharokka Public
Forked from gbouras13/pharokkafast phage annotation program
Python MIT License UpdatedOct 26, 2023 -
sregistry-cli Public
Forked from singularityhub/sregistry-cliSingularity Global Client for container management
Python Mozilla Public License 2.0 UpdatedJun 20, 2023 -
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pagoo Public
A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.
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NanoCLUST Public
Forked from genomicsITER/NanoCLUSTNanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
Nextflow MIT License UpdatedSep 14, 2022 -
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pagoo_publication_scripts Public
Scripts supporting pagoo's publication
R MIT License UpdatedJul 29, 2021 -
PIRATE Public
Forked from SionBayliss/PIRATEA toolbox for pangenome analysis and threshold evaluation.
Perl GNU General Public License v3.0 UpdatedJun 25, 2021 -
MLSTar Public
An easy way of MLSTyping your genomes in R.
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ncov2019-artic-nf Public
Forked from connor-lab/ncov2019-artic-nfA Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Nextflow UpdatedJul 16, 2020 -
nCOV19SOP-Artic Public
Nextflow pipeline for ARTIC-nCoV-bioinformaticsSOP-v1.0.0
Nextflow UpdatedMay 14, 2020 -
ampliseq Public
Forked from nf-core/ampliseq16S rRNA amplicon sequencing analysis workflow using QIIME2
Nextflow MIT License UpdatedMar 9, 2020 -
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phylen Public
Compute a phylogeny using EggNOG database
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pangenome_simulation_figures Public
Repository for manuscript script and figures
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simurg Public
Simulate pangenomes according to the IMG + Neutral models
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Curso_Metagenomica_IIBCE Public
Tutoriales para el curso de Metagenómica Funcional CABBIO
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rBLAST Public
Forked from mhahsler/rBLASTInterface for the Basic Local Alignment Search Tool (BLAST) - R-Package
R GNU General Public License v3.0 UpdatedApr 29, 2018 -
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