Stars
Specification for the ELN File Format
Parametrise (python3 only) and execute Jupyter notebooks
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnal…
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.
Deployment files for Renku admins
Playbooks and other files to build a (virtual) Spark cluster for Prof. Helmchen's research group
Vagrant project to spin up a cluster of 4 32-bit CentOS6.5 Linux virtual machines with Hadoop v2.6.0 and Spark v1.1.1