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Sand-methanogen-manuscript Public
Forked from GreeningLab/Sand-methanogen-manuscriptA repository for analysis scripts and files for manuscript "Aerotolerant methanogens use seaweed and seagrass metabolites to drive marine methane emissions"
Shell GNU General Public License v3.0 UpdatedMar 14, 2025 -
eukrhythmic Public
Forked from AlexanderLabWHOI/eukrhythmicA metatranscriptomic pipeline optimized for the study of microeukaryotes.
Python MIT License UpdatedNov 22, 2024 -
ggpicrust2 Public
Forked from cafferychen777/ggpicrust2Make Picrust2 Output Analysis and Visualization Easier
R MIT License UpdatedNov 10, 2024 -
TYMEFLIES_Viral Public
Forked from AnantharamanLab/TYMEFLIES_ViralThe scripts for the project of "TYMEFLIES_Viral"
Python Other UpdatedApr 25, 2024 -
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icn3d Public
Forked from ncbi/icn3dweb-based protein structure viewer and analysis tool interactively or in batch mode
JavaScript Other UpdatedFeb 27, 2024 -
GToTree Public
Forked from AstrobioMike/GToTreeA user-friendly workflow for phylogenomics
Shell GNU General Public License v3.0 UpdatedFeb 19, 2024 -
Reprogrammed-EMIRGE Public
Forked from yedeng-lab/Reprogrammed-EMIRGEPython GNU General Public License v3.0 UpdatedDec 14, 2023 -
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graftM Public
Forked from geronimp/graftMGraftM - Rapid community profiles from metagenomes
Python GNU General Public License v3.0 UpdatedOct 7, 2023 -
inStrain Public
Forked from MrOlm/inStrainBioinformatics program inStrain
Python MIT License UpdatedAug 24, 2023 -
rgeos Public
Forked from cran/rgeos❗ This is a read-only mirror of the CRAN R package repository. rgeos — Interface to Geometry Engine - Open Source ('GEOS'). Homepage: https://r-forge.r-project.org/projects/rgeos/ https://libgeos.o…
C Other UpdatedJul 18, 2023 -
clinker Public
Forked from gamcil/clinkerGene cluster comparison figure generator
Python MIT License UpdatedJul 14, 2023 -
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EukHeist Public
Forked from AlexanderLabWHOI/EukHeistJupyter Notebook MIT License UpdatedJun 20, 2023 -
social_niche_breadth_SNB Public
Forked from MGXlab/social_niche_breadth_SNBCalculate the Social Niche Breadth (SNB) score of all taxonomic lineages in a set of microbiomes.
Python MIT License UpdatedApr 13, 2023 -
BioData Public
Forked from bjtully/BioDataAll of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
Python MIT License UpdatedMar 2, 2023 -
phylo Public
Forked from Tancata/phyloHelper scripts for making phylogenies
Python MIT License UpdatedNov 22, 2022 -
ggClusterNet Public
Forked from taowenmicro/ggClusterNetMicrobial ecological network visualization clustering
R UpdatedAug 11, 2022 -
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treedater Public
Forked from emvolz/treedaterScalable relaxed clock phylogenetic dating
R UpdatedMar 11, 2022 -
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CompareM Public
Forked from donovan-h-parks/CompareMA toolbox for comparative genomics.
Python GNU General Public License v3.0 UpdatedMay 26, 2021 -
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in_situ_genome_sequencing_processing Public
Forked from zchiang/in_situ_genome_sequencing_processingMATLAB MIT License UpdatedNov 30, 2020 -
vcf2maf Public
Forked from mskcc/vcf2mafConvert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Perl Other UpdatedOct 29, 2020 -
McSplicer Public
Forked from canzarlab/McSplicerPython GNU General Public License v3.0 UpdatedOct 28, 2020 -
topic-functional-annotation Public
Forked from biovcnet/topic-functional-annotationA repository for the lessons and notebooks used for Binder tutorials
Python MIT License UpdatedOct 24, 2020 -
MACSE_V2_PIPELINES Public
Forked from ranwez/MACSE_V2_PIPELINESThis repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated wi…
Shell UpdatedOct 19, 2020
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