Skip to content

Conversation

@whelena
Copy link

@whelena whelena commented Jun 20, 2021

I have vcf outputs from delly which do not have an ALT field for SVTYPE=BND, instead the info is recorded in the INFO field under MATECHROM, MATEPOS and MATESTRAND.

I added a few lines in the vcftobedpeconverter.py to add this option.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant