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Open source Python library for converting PDF to DOCX.

Python 3,163 459 Updated May 28, 2025

FlowGram is an extensible workflow development framework with built-in canvas, form, variable, and materials that helps developers build AI workflow platforms faster and simpler.

TypeScript 7,229 608 Updated Nov 7, 2025

An AI agent development platform with all-in-one visual tools, simplifying agent creation, debugging, and deployment like never before. Coze your way to AI Agent creation.

TypeScript 18,404 2,561 Updated Nov 7, 2025

Repo for TCMChat: A Generative Large Language Model for Traditional Chinese Medicine

Python 53 16 Updated Nov 7, 2024

State is a machine learning model that predicts cellular perturbation response across diverse contexts

Python 445 120 Updated Nov 7, 2025

Arc Virtual Cell Atlas

Jupyter Notebook 445 41 Updated May 6, 2025

Wiki.js | A modern and powerful wiki app built on Node.js

Vue 27,275 3,092 Updated Oct 28, 2025

The fastest knowledge base for growing teams. Beautiful, realtime collaborative, feature packed, and markdown compatible.

TypeScript 35,838 2,937 Updated Nov 9, 2025

Golang实现的基于beego框架的接口在线文档管理系统

Go 7,743 1,975 Updated Oct 29, 2025

MatchMaker command line application

Python 1 Updated Mar 10, 2021

This is a package that allows indexing of django models in elasticsearch with elasticsearch-dsl-py.

Python 1,057 270 Updated Jul 23, 2025

An Improved Method for Phenotype Concept Recognition Using Rich HPO Information

GAP 6 1 Updated Aug 27, 2024

LLM-powered framework for deep document understanding, semantic retrieval, and context-aware answers using RAG paradigm.

Go 7,451 841 Updated Nov 7, 2025

Config files and tunable for reproducibility

Shell 4 1 Updated Oct 10, 2024

PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.

Python 5 1 Updated Nov 7, 2025

A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

Python 16,826 1,182 Updated Nov 2, 2025

PandaWiki 是一款 AI 大模型驱动的开源知识库搭建系统,帮助你快速构建智能化的 产品文档、技术文档、FAQ、博客系统,借助大模型的力量为你提供 AI 创作、AI 问答、AI 搜索等能力。

TypeScript 7,753 681 Updated Nov 7, 2025

Differential Diagnosis Pipeline in Diagnosing Rare Diseases Using EHRs

Python 7 Updated Nov 28, 2024

runjob is a program for managing a group of related jobs running on a compute cluster

Python 11 4 Updated Nov 6, 2025

Transforms complex documents like PDFs into LLM-ready markdown/JSON for your Agentic workflows.

Python 48,383 3,996 Updated Nov 6, 2025

Official repository for the Boltz biomolecular interaction models

Python 3,437 677 Updated Oct 3, 2025

A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

Jupyter Notebook 1,097 294 Updated Jun 10, 2024

[NeurIPS 2024 Datasets and Benchmark Track Oral] MedCalc-Bench: Evaluating Large Language Models for Medical Calculations

Python 75 15 Updated Nov 5, 2025

A full spaCy pipeline and models for scientific/biomedical documents.

Python 1,896 246 Updated Oct 1, 2025

Tutorial on building a computing cluster for bioinformatics

87 36 Updated Nov 28, 2023

Model Context Protocol with Neo4j

Python 794 210 Updated Nov 7, 2025

Updated Kraken DB install scripts to cope with new-ish NCBI structure

Perl 14 3 Updated Jan 25, 2020

AIONER

Python 62 16 Updated Jul 25, 2024

👀 DeepSeeNet is a deep learning framework for classifying patient-based age-related macular degeneration severity in retinal color fundus photographs.

Python 65 30 Updated Jul 25, 2025
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