Stars
User friendly and accurate binder design pipeline
Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
A fully open source biomolecular structure prediction model based on AlphaFold3
mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Pre…
Sidechain conditioning and modeling for full-atom protein sequence design
A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS
Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
Antibody Numbering and Antigen Receptor ClassIfication
Convenience Python APIs for antibody numbering using ANARCI
oxpig / ImmuneBuilder
Forked from brennanaba/ImmuneBuilderPredict the structure of immune receptor proteins
AlphaBind code + model accompanying pre-print
All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
This repo is meant to serve as a guide for Machine Learning/AI technical interviews.
DoEKS is a tool to build, deploy and scale Data Platforms on Amazon EKS
A PyTorch native platform for training generative AI models
This repository contains the challenges about domains of Artificial Intelligence.
The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design.
MBINF Introduction to Python Workshop 2024
Open source implementation of AlphaFold3
It is my belief that you, the postgraduate students and job-seekers for whom the book is primarily meant will benefit from reading it; however, it is my hope that even the most experienced research…
Pose checks for 3D Structure-based Drug Design methods