A Python library for extracting structured information from unstructured text using LLMs with precise source grounding and interactive visualization.

A FastMCP server implementation for the Semantic Scholar API, providing comprehensive access to academic paper data, author information, and citation networks.

Repository for StripedHyena, a state-of-the-art beyond Transformer architecture

Docker container script to use the UDM Pro drive bay as a SMB network drive

Add your HDD, SSD and NVMe drives to your Synology's compatible drive database and a lot more

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

AI powered slack bot

Swift demonstration of how to build a Slack app that enables end-users to interact with a ChatGPT bot

Sends alerts to a Slack/Discord channel or an email for potentially interesting new articles selected from RSS feeds.

BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding

🎞️ Subtitles generation tool (Web-UI + CLI + Python package) powered by OpenAI's Whisper and its variants 🎞️

Full Stack SolarLLM Zero to All

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Xron - an omni basecaller for ONT reads.

Benchmarked base calling models for nanopore sequencing providing super high accuracy and improved RNA modification detection

Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"

An LLM agent that conducts deep research (local and web) on any given topic and generates a long report with citations.

📝 Exam bubble sheet scorer. Created with OpenCV and Python.

AI PDF chatbot agent built with LangChain & LangGraph

Tensor library for machine learning

INT4/INT5/INT8 and FP16 inference on CPU for RWKV language model

A fully convolutional architecture for basecalling nanopore RNA sequencing data

SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping

Stable Diffusion web UI

This repo includes ChatGPT prompt curation to use ChatGPT and other LLM tools better.

An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads