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1. bwa bwa Public

   Forked from lh3/bwa

   Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

   C

2. dna-seq-varlociraptor dna-seq-varlociraptor Public

   Forked from snakemake-workflows/dna-seq-varlociraptor

   A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of …

   Python

3. bioconda-recipes bioconda-recipes Public

   Forked from bioconda/bioconda-recipes

   Conda recipes for the bioconda channel.

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4. uncovar uncovar Public

   Forked from IKIM-Essen/uncovar

   Transparent and robust SARS-CoV-2 variant calling and lineage assignment with comprehensive reporting.

   Python

5. rust-bio rust-bio Public

   Forked from rust-bio/rust-bio

   This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

   Rust

6. CreateVariationGraph CreateVariationGraph Public

   Forked from Raelhuizenga/CreateVariationGraph

   This repository contains code to create a variation graph needed to run several viral genome assemblers

   Python