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Showing results

DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

Jupyter Notebook 59 5 Updated Mar 5, 2025

A system for the curation of Variants of Uncertain Significance (VUS)

TypeScript 1 Updated Dec 13, 2025

Open Human Genome Library

56 1 Updated Dec 22, 2025

Catalog of G6PD variants, genotype-phenotype associations, and functional information

4 Updated Oct 8, 2025

Share medical letter automatically translated, de-identified and summarized using deep learning

Python 7 1 Updated Sep 19, 2025

A program designed to generate all possible guides targeting a SNP to use with CBE or ABE CRISPR reagents

R 1 Updated Jul 21, 2025

AirPods liberated from Apple's ecosystem.

Kotlin 24,250 1,270 Updated Dec 29, 2025

for manuscript "Characterization of sequencing error profile in three next generation sequencing platforms"

Python 1 Updated Jun 19, 2025

A flexible processor for sequencing reads

Rust 22 Updated Dec 23, 2025

Regenotyping structural variants through an accurate and efficient force-calling method

Python 20 1 Updated Nov 28, 2025

A set of ready to use scientific skills for Claude

Python 5,077 612 Updated Jan 9, 2026
Python 47 5 Updated Sep 4, 2025

Svirlpool: structural variant detection from long read sequencing by local assembly

Python 7 Updated Jan 9, 2026

Code associated with allele sequence reconstruction from long read amplicon data.

Python 1 Updated Nov 12, 2025
Python 4 1 Updated Sep 10, 2025

LongQC is a tool for the data quality control of the PacBio and ONT long reads.

C 178 20 Updated Dec 1, 2023

Lightweight mosaic/somatic SV caller for long reads (WIP)

JavaScript 35 3 Updated Oct 27, 2025
Python 1,754 78 Updated Dec 16, 2025

Extremely fast and accurate Nanopore demultiplexing

Rust 74 Updated Jan 8, 2026
Python 11 2 Updated Dec 1, 2025
Jupyter Notebook 2 Updated Oct 23, 2025

A modular annotation tool for genomic variants

JavaScript 142 39 Updated Dec 22, 2025

A fast, robust and accurate variant calling software for human germline DNA analysis

C++ 8 1 Updated Oct 23, 2025

ARCLID: Accurate and Robust Characterizing of Long Insertion and Deletions in Genome

Python 1 Updated Oct 21, 2025

Repo for oncoseq workflow.

Nextflow 6 2 Updated Dec 11, 2025

A high-performance modification detection tool in Rust

Rust 63 1 Updated Oct 10, 2025

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java 280 73 Updated May 21, 2025

A Python package for pharmacogenomics (PGx) research

Python 82 17 Updated Jan 4, 2026

Run any GUI app in the terminal❗

Go 7,599 185 Updated Dec 6, 2025
Python 16 Updated Jan 5, 2026
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