LAION research paper dataset visual explorer 🔬 🧑‍🔬 👩‍🔬

The official codebase of the paper Modeling All-Atom Glycan Structures via Hierarchical Message Passing and Multi-Scale Pre-training.

dLLM: Simple Diffusion Language Modeling

Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

A research project exploring fine-tuning BERT-style models for text generation

A character-level language diffusion model trained on Tiny Shakespeare

Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Foundation Models for Genomics & Transcriptomics

An atlas of AAV genetic variants

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Genomic Pre-trained Network

Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch

stock market models - have fun

MiniFold: Simple, Fast and Accurate Protein Structure Prediction

Code for the analyses in the human reference interactome paper.

A meticulously curated resource list focused on computational methods for drug discovery.

benchmarking AI-powered docking methods from the perspective of virtual screening

This is the GitHub repository accompanying Krishnan, Anahtar, Valeri, et al., 2025

A virtual lab of LLM agents for science research

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

Fine-tuning Boltz-1 for domain knowledge adaption

Self-contained, minimalistic implementation of diffusion models with Pytorch.

[AAAI 2025] CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction

workflow used to prepare PPB-Affinity database