Lists (13)
Stars
The fastest JSON schema Validator. Supports JSON Schema draft-04/06/07/2019-09/2020-12 and JSON Type Definition (RFC8927)
DORA (Draft Outline Research Assistant) is an advanced AI-driven tool designed to streamline the process of drafting academic papers and other related documents.
MultiQC plugin replicating the most used plots and tables from Illumina's SAV
Nextflow plugin for reading properties of AnnData (h5ad) files
A tool to detect whether a PDF has a bad redaction
STUMPY is a powerful and scalable Python library for modern time series analysis
Runs and compares different methylation based cell type deconvolution algorithms
Effortless AI-assisted data labeling with AI support from YOLO, Segment Anything (SAM+SAM2), MobileSAM!!
Codespaces but open-source, client-only and unopinionated: Works with any IDE and lets you use any cloud, kubernetes or just localhost docker.
lakeFS - Data version control for your data lake | Git for data
Differential abundance and gene expression in single-cell data
Code to reproduce the results from the IBDome paper
Clean data and load it to the central database.
The OpenStudyBuilder is an open-source project for clinical study evaluations. This tool is a new approach for working with studies that once fully implemented will drive end-to-end consistency and…
Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data
The AnnSQL package enables SQL based queries on AnnData objects.
Multimodal Whole Slide Foundation Model for Pathology
Public terrain tiles for interactive web map visualizations
Open hardware and software tools for communicating with Miele appliances via their optical diagnostic interface
Versatile typeface for code, from code.
Free cross-platform password manager compatible with KeePass
A modern static site generator by the Material for MkDocs team
github action for pre-commit-ci lite
List of Spatial Transcriptomics related Tools organized per category
C++ whole slide image reader with native python bindings