Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

The AnnSQL package enables SQL based queries on AnnData objects.

Multimodal Whole Slide Foundation Model for Pathology

Public terrain tiles for interactive web map visualizations

High-Performance Sparse Matrix Library

Open hardware and software tools for communicating with Miele appliances via their optical diagnostic interface

Versatile typeface for code, from code.

Free cross-platform password manager compatible with KeePass

Command line csv viewer

A modern static site generator by the creators of Material for MkDocs

github action for pre-commit-ci lite

List of Spatial Transcriptomics related Tools organized per category

C++ whole slide image reader with native python bindings

Statistics for the scverse.

Run nf-core modules directly from python

Pulumi - Infrastructure as Code in any programming language 🚀

An EDC and Data Standard agnostic SDTM data transformation engine that automates the transformation of raw clinical data in ODM format to SDTM based on standard mapping algorithms

Nextflow plugin enabling seamless integration between Nextflow and Python 🧪

Solid Tumor Associative Modeling in Pathology

Override and customize Python packages without touching their code

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

A python package for fitting a wide variety of Mixture Models

An efficient Python library for fast fixed-radius nearest neighbor search

Variational inference for single-cell differential gene expression of multiple patients

data load tool (dlt) is an open source Python library that makes data loading easy 🛠️

REANA: Reusable research data analysis platform

Gaussian mixture models in PyTorch.