Search results

Inquiry Regarding Class Code "~" in gffcompare Output

Status: Open.

#111 In gpertea/gffcompare;

· LCJ-up opened on Sep 25, 2025

Fails to generate stats file when comparing over six .gff files

Status: Open.

#110 In gpertea/gffcompare;

· lisavader opened on Aug 21, 2025

Clarification on Transcript Redundancy Detection and Merging in Multi-Exon Cases

Status: Open.

#109 In gpertea/gffcompare;

· negroenvidioso opened on Jul 30, 2025

add command line options to control single-exon transcript merging

enhancement

Status: Open.

#104 In gpertea/gffcompare;

· gpertea opened on May 23, 2025

How does gffcompare determine the start and end positions when merging transcripts?

enhancement

Status: Open.

#103 In gpertea/gffcompare;

· ZhangZhenYang-zzy opened on May 23, 2025

Can transcripts from the same gene be classified as 'x' and 'u' by GffCompare?

Status: Open.

#101 In gpertea/gffcompare;

· RafaellaFerraz opened on Apr 19, 2025

1. How to cluster transcripts from multiple query gtf files? 2. Something wired about tss_id

to investigate

Status: Open.

#99 In gpertea/gffcompare;

· dudududu12138 opened on Dec 25, 2024

missing transcripts in both tracking and combined.gtf

Status: Open.

#96 In gpertea/gffcompare;

· MaissaNabil opened on Oct 22, 2024

Class code "c" assigned to instance where terminal exon contains an overhang region.

Status: Open.

#95 In gpertea/gffcompare;

· Riley-Grindle opened on Oct 7, 2024

What is the proper interpretation of the .loci file?

Status: Open.

#94 In gpertea/gffcompare;

· jamestwebber opened on Sep 25, 2024

Stringent comparison of CDS using --strict-match

Status: Open.

#92 In gpertea/gffcompare;

· etvedte opened on Jul 29, 2024

Should I filter the transcript with class code "s"?

Status: Open.

#89 In gpertea/gffcompare;

· JD12138 opened on Jun 10, 2024