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stringtie Public
Transcript assembly and quantification for RNA-Seq
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r-side-kick Public
Forked from simonpcouch/sideCoding agent for R (based on simonpcouch/side)
R Other UpdatedNov 7, 2025 -
local-ai-packaged Public
Forked from coleam00/local-ai-packagedRun all your local AI together in one package - Ollama, Supabase, n8n, Open WebUI, and more!
Python Apache License 2.0 UpdatedOct 23, 2025 -
tiebrush Public
summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
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chatgpt-js Public
javascript/tampermonkey tools to add/fix ChatGPT UI
JavaScript UpdatedOct 5, 2025 -
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gscripts Public
mish-mash of scripts I have been using in genomics (bioinformatics) or IT/engineering
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gpt-researcher Public
Forked from assafelovic/gpt-researcherLLM based autonomous agent that conducts in-depth web research on any given topic
Python Apache License 2.0 UpdatedAug 9, 2025 -
HRM Public
Forked from sapientinc/HRMHierarchical Reasoning Model Official Release
Python Apache License 2.0 UpdatedAug 3, 2025 -
mcp-go Public
Forked from mark3labs/mcp-goA Go implementation of the Model Context Protocol (MCP), enabling seamless integration between LLM applications and external data sources and tools.
Go MIT License UpdatedJul 22, 2025 -
agent-zero Public
Forked from agent0ai/agent-zeroAgent Zero AI framework
Python Other UpdatedJul 22, 2025 -
gffcompare Public
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
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gclib Public
GCLib - Genomic C++ library of reusable code for bioinformatics projects
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gauth Public
Forked from pcarrier/gauthGoogle Authenticator in the terminal
Go ISC License UpdatedJul 2, 2025 -
bedrock-test Public
simple boto3 test script for testing access to Amazon Bedrock models
Python UpdatedJun 19, 2025 -
DesktopCommanderMCP Public
Forked from wonderwhy-er/DesktopCommanderMCPThis is MCP server for Claude that gives it terminal control
JavaScript MIT License UpdatedJun 16, 2025 -
DeconvoBuddies Public
Forked from LieberInstitute/DeconvoBuddiesHelper Functions for LIBD Deconvolution
R Artistic License 2.0 UpdatedJun 11, 2025 -
Biomni Public
Forked from snap-stanford/BiomniBiomni: a general-purpose biomedical AI agent
Jupyter Notebook UpdatedJun 1, 2025 -
docling Public
Forked from docling-project/doclingGet your documents ready for gen AI
Python MIT License UpdatedMay 24, 2025 -
LightRAG Public
Forked from HKUDS/LightRAG"LightRAG: Simple and Fast Retrieval-Augmented Generation"
Python MIT License UpdatedMay 22, 2025 -
mcphost-cli Public
Forked from mark3labs/mcphostA CLI host application that enables Large Language Models (LLMs) to interact with external tools through the Model Context Protocol (MCP).
Go MIT License UpdatedMay 22, 2025 -
ExtractThinker Public
Forked from enoch3712/ExtractThinkerExtractThinker is a Document Intelligence library for LLMs, offering ORM-style interaction for flexible and powerful document workflows.
Python Apache License 2.0 UpdatedMay 22, 2025 -
gtex-pipeline Public
Forked from broadinstitute/gtex-pipelineGTEx & TOPMed data production and analysis pipelines
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 22, 2025 -
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graphiti Public
Forked from getzep/graphitiBuild Real-Time Knowledge Graphs for AI Agents
Python Apache License 2.0 UpdatedMay 22, 2025 -
crawl4ai Public
Forked from unclecode/crawl4ai🔥🕷️ Crawl4AI: Open-source LLM Friendly Web Crawler & Scrapper
Python Apache License 2.0 UpdatedMay 22, 2025 -
HiRAG Public
Forked from hhy-huang/HiRAGRetrieval-Augmented Generation with Hierarchical Knowledge
Python MIT License UpdatedMay 7, 2025 -
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gdrive-spreasheet-access Public
testing spreadsheet access on Google drive to reconcile 2 spreadsheets
Python UpdatedApr 7, 2025
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